HL_9H4N_065

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

UUUUGGUUUUA

Length

11 nucleotides

Bulged bases

9H4N|1|A2|U|4006

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|A2|U|4004
9H4N|1|A2|U|4005
9H4N|1|A2|U|4006
9H4N|1|A2|U|4007
9H4N|1|A2|G|4008
9H4N|1|A2|G|4009
9H4N|1|A2|U|4010
9H4N|1|A2|U|4011
9H4N|1|A2|U|4012
9H4N|1|A2|U|4013
9H4N|1|A2|A|4014

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain F1

Large ribosomal subunit protein eL13

Chain U2

60S ribosomal protein L27a

Chain c2

Large ribosomal subunit protein eL36

Chain i2

Large ribosomal subunit protein eL42