HL_9H4N_072

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

9H4N|1|A2|G|4346, 9H4N|1|A2|C|4350

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|A2|C|4340
9H4N|1|A2|U|4341
9H4N|1|A2|G|4342
9H4N|1|A2|A|4343
9H4N|1|A2|A|4344
9H4N|1|A2|C|4345
9H4N|1|A2|G|4346
9H4N|1|A2|C|4347
9H4N|1|A2|C|4348
9H4N|1|A2|U|4349
9H4N|1|A2|C|4350
9H4N|1|A2|U|4351
9H4N|1|A2|A|4352
9H4N|1|A2|A|4353
9H4N|1|A2|G|4354

Current chains

Chain A2

28S ribosomal RNA

Nearby chains

Chain C1

Large ribosomal subunit protein uL6

Chain I2

Large ribosomal subunit protein uL13

Chain g2

Large ribosomal subunit protein eL40