HL_9H4N_099

3D structure

PDB id

9H4N (explore in PDB, NAKB, or RNA 3D Hub)

Description

RPL13 (eL13)-mutant 80S ribosome from mouse

Experimental method

ELECTRON MICROSCOPY

Resolution

2.46 Å

Loop

Sequence

UCGGCGGGGCCCGA

Length

14 nucleotides

Bulged bases

9H4N|1|m2|G|753, 9H4N|1|m2|C|755, 9H4N|1|m2|G|790, 9H4N|1|m2|C|793, 9H4N|1|m2|C|794, 9H4N|1|m2|G|795

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H4N|1|m2|U|751
9H4N|1|m2|C|752
9H4N|1|m2|G|753
9H4N|1|m2|G|754
9H4N|1|m2|C|755
9H4N|1|m2|G|788
9H4N|1|m2|G|789
9H4N|1|m2|G|790
9H4N|1|m2|G|791
9H4N|1|m2|C|792
9H4N|1|m2|C|793
9H4N|1|m2|C|794
9H4N|1|m2|G|795
9H4N|1|m2|A|796

Current chains

Chain m2

18S ribosomal RNA

Nearby chains

Chain K3

40S ribosomal protein S6

Chain r2

Small ribosomal subunit protein eS4