HL_9H4N_121
3D structure
- PDB id
- 9H4N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RPL13 (eL13)-mutant 80S ribosome from mouse
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.46 Å
Loop
- Sequence
- GGGCCCAUAACCC
- Length
- 13 nucleotides
- Bulged bases
- 9H4N|1|n2|C|33, 9H4N|1|n2|C|34
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9H4N_121 not in the Motif Atlas
- Homologous match to HL_2BTE_006
- Geometric discrepancy: 0.362
- The information below is about HL_2BTE_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9H4N|1|n2|G|29
9H4N|1|n2|G|30
9H4N|1|n2|G|31
9H4N|1|n2|C|32
9H4N|1|n2|C|33
9H4N|1|n2|C|34
9H4N|1|n2|A|35
9H4N|1|n2|U|36
9H4N|1|n2|A|37
9H4N|1|n2|A|38
9H4N|1|n2|C|39
9H4N|1|n2|C|40
9H4N|1|n2|C|41
Current chains
- Chain n2
- Transfer RNA
Nearby chains
- Chain Bx
- Messenger RNA
- Chain m2
- Small subunit ribosomal RNA; SSU rRNA
- Chain x2
- Small ribosomal subunit protein uS19
- Chain y2
- Small ribosomal subunit protein uS9
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