HL_9H8G_004

3D structure

PDB id

9H8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 5 30S-GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H8G_004 not in the Motif Atlas

Geometric match to HL_9DXL_001

Geometric discrepancy: 0.0711

The information below is about HL_9DXL_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9H8G|1|A|C|186
9H8G|1|A|G|187
9H8G|1|A|C|188
9H8G|1|A|A|189
9H8G|1|A|A|190
9H8G|1|A|G|191

Current chains

Chain A

16S rRNA fragment (1078-MER)

Nearby chains

Chain T

Small ribosomal subunit protein bS20