HL_9H9H_013

3D structure

PDB id

9H9H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 1 30S-IF1-IF2-IF3-GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H9H_013 not in the Motif Atlas

Geometric match to HL_5F9F_003

Geometric discrepancy: 0.132

The information below is about HL_5F9F_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

9H9H|1|A|C|379
9H9H|1|A|G|380
9H9H|1|A|C|381
9H9H|1|A|A|382
9H9H|1|A|A|383
9H9H|1|A|G|384

Current chains

Chain A

16S RNA (1534-MER)

Nearby chains

Chain P

Small ribosomal subunit protein bS16