HL_9H9H_014

3D structure

PDB id

9H9H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 1 30S-IF1-IF2-IF3-GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9H9H|1|A|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H9H_014 not in the Motif Atlas

Geometric match to HL_5J7L_030

Geometric discrepancy: 0.139

The information below is about HL_5J7L_030

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

9H9H|1|A|C|419
9H9H|1|A|U|420
9H9H|1|A|U|421
9H9H|1|A|C|422
9H9H|1|A|G|423
9H9H|1|A|G|424

Current chains

Chain A

16S RNA (1534-MER)

Nearby chains

Chain C

Small ribosomal subunit protein uS3

Chain D

Small ribosomal subunit protein uS4