HL_9H9H_029

3D structure

PDB id

9H9H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 1 30S-IF1-IF2-IF3-GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

9H9H|1|A|C|1136, 9H9H|1|A|G|1139

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H9H_029 not in the Motif Atlas

Geometric match to HL_5J7L_156

Geometric discrepancy: 0.2404

The information below is about HL_5J7L_156

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

9H9H|1|A|G|1134
9H9H|1|A|U|1135
9H9H|1|A|C|1136
9H9H|1|A|C|1137
9H9H|1|A|G|1138
9H9H|1|A|G|1139
9H9H|1|A|C|1140

Current chains

Chain A

16S RNA (1534-MER)

Nearby chains

Chain I

Small ribosomal subunit protein uS9