HL_9H9I_002

3D structure

PDB id

9H9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 2 (HEAD) 30S-IF1-IF3-tRNA-GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H9I_002 not in the Motif Atlas

Geometric match to HL_4Y1M_004

Geometric discrepancy: 0.1288

The information below is about HL_4Y1M_004

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

9H9I|1|1|A|1012
9H9I|1|1|G|1013
9H9I|1|1|A|1014
9H9I|1|1|G|1015
9H9I|1|1|A|1016
9H9I|1|1|U|1017

Current chains

Chain 1

16S RNA (head domain)

Nearby chains

Chain N

Small ribosomal subunit protein uS14

Chain S

Small ribosomal subunit protein uS19