HL_9H9I_006

3D structure

PDB id

9H9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 2 (HEAD) 30S-IF1-IF3-tRNA-GE81112

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUCCGGC

Length

7 nucleotides

Bulged bases

9H9I|1|1|C|1136, 9H9I|1|1|G|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H9I_006 not in the Motif Atlas

Geometric match to HL_6DME_002

Geometric discrepancy: 0.2431

The information below is about HL_6DME_002

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

9H9I|1|1|G|1134
9H9I|1|1|U|1135
9H9I|1|1|C|1136
9H9I|1|1|C|1137
9H9I|1|1|G|1138
9H9I|1|1|G|1139
9H9I|1|1|C|1140

Current chains

Chain 1

16S RNA (head domain)

Nearby chains

Chain I

Small ribosomal subunit protein uS9