HL_9H9K_011
3D structure
- PDB id
- 9H9K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Complex 3 (HEAD) 30S-tRNA-GE81112
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GCUCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9H9K_011 not in the Motif Atlas
- Geometric match to HL_9DFC_104
- Geometric discrepancy: 0.2374
- The information below is about HL_9DFC_104
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
9H9K|1|3|G|32
9H9K|1|3|C|33
9H9K|1|3|U|34
9H9K|1|3|C|35
9H9K|1|3|A|36
9H9K|1|3|U|37
9H9K|1|3|A|38
9H9K|1|3|A|39
9H9K|1|3|C|40
Current chains
- Chain 3
- t-RNA (5'-R(P*UP*CP*GP*GP*GP*CP*UP*CP*AP*UP*AP*AP*CP*CP*CP*GP*A)-3')
Nearby chains
- Chain 1
- Small subunit ribosomal RNA; SSU rRNA
- Chain 2
- mRNA (5'-R(P*AP*AP*UP*GP*U)-3')
- Chain I
- Small ribosomal subunit protein uS9
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