HL_9H9N_011

3D structure

PDB id

9H9N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 4 (BODY) 30S-GE81112 (weak residual tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9H9N|1|A|U|421

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H9N_011 not in the Motif Atlas

Geometric match to HL_5LYS_002

Geometric discrepancy: 0.1204

The information below is about HL_5LYS_002

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

60

Unit IDs

9H9N|1|A|C|419
9H9N|1|A|U|420
9H9N|1|A|U|421
9H9N|1|A|C|422
9H9N|1|A|G|423
9H9N|1|A|G|424

Current chains

Chain A

16S RNA (1078-MER)

Nearby chains

Chain D

Small ribosomal subunit protein uS4