HL_9H9N_012

3D structure

PDB id

9H9N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 4 (BODY) 30S-GE81112 (weak residual tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

9H9N|1|A|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H9N_012 not in the Motif Atlas

Geometric match to HL_5J7L_012

Geometric discrepancy: 0.1794

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

9H9N|1|A|G|462
9H9N|1|A|U|463
9H9N|1|A|U|464
9H9N|1|A|A|465
9H9N|1|A|A|466
9H9N|1|A|U|467
9H9N|1|A|A|468
9H9N|1|A|C|469
9H9N|1|A|C|470

Current chains

Chain A

16S RNA (1078-MER)

Nearby chains