HL_9H9N_016

3D structure

PDB id

9H9N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Complex 4 (BODY) 30S-GE81112 (weak residual tRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9H9N_016 not in the Motif Atlas

Geometric match to HL_8CRE_211

Geometric discrepancy: 0.0793

The information below is about HL_8CRE_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9H9N|1|A|C|726
9H9N|1|A|G|727
9H9N|1|A|A|728
9H9N|1|A|A|729
9H9N|1|A|G|730
9H9N|1|A|G|731

Current chains

Chain A

16S RNA (1078-MER)

Nearby chains

Chain O

Small ribosomal subunit protein uS15

Chain U

Small ribosomal subunit protein bS21