3D structure

PDB id
9H9N (explore in PDB, NAKB, or RNA 3D Hub)
Description
Complex 4 (BODY) 30S-GE81112 (weak residual tRNA)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
CGCAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9H9N_020 not in the Motif Atlas
Geometric match to HL_4LFB_020
Geometric discrepancy: 0.0715
The information below is about HL_4LFB_020
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_34789.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
335

Unit IDs

9H9N|1|A|C|897
9H9N|1|A|G|898
9H9N|1|A|C|899
9H9N|1|A|A|900
9H9N|1|A|A|901
9H9N|1|A|G|902

Current chains

Chain A
16S RNA (1078-MER)

Nearby chains

No other chains within 10Å

Coloring options:


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