HL_9HA1_016

3D structure

PDB id

9HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_(L22)- precursor states supplemented with Api137 - Canonical PET exit Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

9HA1|1|A|U|546, 9HA1|1|A|G|549

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA1_016 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1952

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

9HA1|1|A|G|543
9HA1|1|A|C|544
9HA1|1|A|U|545
9HA1|1|A|U|546
9HA1|1|A|A|547
9HA1|1|A|G|548
9HA1|1|A|G|549
9HA1|1|A|C|550

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

Large ribosomal subunit protein uL13

Chain R

Large ribosomal subunit protein bL21