3D structure

PDB id
9HA1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pooled 50S subunit C_(L22)- precursor states supplemented with Api137 - Canonical PET exit Api137
Experimental method
ELECTRON MICROSCOPY
Resolution
4.17 Å

Loop

Sequence
UGCCAA
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_9HA1_040 not in the Motif Atlas
Homologous match to HL_7A0S_064
Geometric discrepancy: 0.2317
The information below is about HL_7A0S_064
Detailed Annotation
Ribsomal LSU H95
Broad Annotation
Ribsomal LSU H95
Motif group
HL_65794.5
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
14

Unit IDs

9HA1|1|A|U|2701
9HA1|1|A|G|2702
9HA1|1|A|C|2703
9HA1|1|A|C|2704
9HA1|1|A|A|2705
9HA1|1|A|A|2706

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain N
Large ribosomal subunit protein bL17

Coloring options:


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