HL_9HA1_043

3D structure

PDB id

9HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_(L22)- precursor states supplemented with Api137 - Canonical PET exit Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

9HA1|1|A|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA1_043 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.1775

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9HA1|1|A|G|2819
9HA1|1|A|A|2820
9HA1|1|A|A|2821
9HA1|1|A|G|2822
9HA1|1|A|A|2823
9HA1|1|A|C|2824
9HA1|1|A|G|2825
9HA1|1|A|A|2826
9HA1|1|A|C|2827

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

Large ribosomal subunit protein bL17