HL_9HA3_030

3D structure

PDB id

9HA3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_(L22)-~H61 precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.62 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

9HA3|1|A|U|1325, 9HA3|1|A|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HA3_030 not in the Motif Atlas

Homologous match to HL_9DFE_032

Geometric discrepancy: 0.4823

The information below is about HL_9DFE_032

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

9HA3|1|A|G|1324
9HA3|1|A|U|1325
9HA3|1|A|U|1326
9HA3|1|A|A|1327
9HA3|1|A|A|1328
9HA3|1|A|U|1329
9HA3|1|A|C|1330

Current chains

Chain A

23S ribosomal RNA

Nearby chains