HL_9HAI_040

3D structure

PDB id

9HAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C-CP_L2-L28 precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9HAI|1|A|G|2751, 9HAI|1|A|C|2755

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HAI_040 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.4273

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

9HAI|1|A|C|2745
9HAI|1|A|U|2746
9HAI|1|A|G|2747
9HAI|1|A|A|2748
9HAI|1|A|A|2749
9HAI|1|A|A|2750
9HAI|1|A|G|2751
9HAI|1|A|C|2752
9HAI|1|A|A|2753
9HAI|1|A|U|2754
9HAI|1|A|C|2755
9HAI|1|A|U|2756
9HAI|1|A|A|2757
9HAI|1|A|A|2758
9HAI|1|A|G|2759

Current chains

Chain A

23S ribosomal RNA

Nearby chains