HL_9HFM_001

3D structure

PDB id

9HFM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translation-initiation state of human mitochondrial ribosome small subunit (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUUGGUCCUAG

Length

11 nucleotides

Bulged bases

9HFM|1|A|U|656

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HFM_001 not in the Motif Atlas

Homologous match to HL_5J7L_001

Geometric discrepancy: 0.1299

The information below is about HL_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89881.5

Basepair signature

cWW-tHW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9HFM|1|A|U|654
9HFM|1|A|U|655
9HFM|1|A|U|656
9HFM|1|A|G|657
9HFM|1|A|G|658
9HFM|1|A|U|659
9HFM|1|A|C|660
9HFM|1|A|C|661
9HFM|1|A|U|662
9HFM|1|A|A|663
9HFM|1|A|G|664

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain D

28S ribosomal protein S5, mitochondrial