HL_9HFM_009

3D structure

PDB id

9HFM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translation-initiation state of human mitochondrial ribosome small subunit (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HFM_009 not in the Motif Atlas

Geometric match to HL_6M0X_001

Geometric discrepancy: 0.0934

The information below is about HL_6M0X_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9HFM|1|A|C|1023
9HFM|1|A|G|1024
9HFM|1|A|A|1025
9HFM|1|A|A|1026
9HFM|1|A|A|1027
9HFM|1|A|G|1028

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain 2

Small ribosomal subunit protein mS37

Chain L

28S ribosomal protein S15, mitochondrial

Chain Q

Small ribosomal subunit protein bS21m