HL_9HFM_013

3D structure

PDB id

9HFM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translation-initiation state of human mitochondrial ribosome small subunit (State D)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAUGAA

Length

7 nucleotides

Bulged bases

9HFM|1|A|A|1283, 9HFM|1|A|U|1284

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HFM_013 not in the Motif Atlas

Geometric match to HL_8G9Z_003

Geometric discrepancy: 0.3384

The information below is about HL_8G9Z_003

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37569.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

9HFM|1|A|U|1281
9HFM|1|A|G|1282
9HFM|1|A|A|1283
9HFM|1|A|U|1284
9HFM|1|A|G|1285
9HFM|1|A|A|1286
9HFM|1|A|A|1287

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain B

28S ribosomal protein S2, mitochondrial

Chain D

28S ribosomal protein S5, mitochondrial

Chain E

28S ribosomal protein S6, mitochondrial

Chain S

28S ribosomal protein S23, mitochondrial