HL_9HFO_002

3D structure

PDB id

9HFO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translation-initiation state of human mitochondrial ribosome small subunit (State G)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCCCAUACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HFO_002 not in the Motif Atlas

Geometric match to HL_9DFC_104

Geometric discrepancy: 0.0994

The information below is about HL_9DFC_104

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

9HFO|1|5|G|31
9HFO|1|5|C|32
9HFO|1|5|C|33
9HFO|1|5|C|34
9HFO|1|5|A|35
9HFO|1|5|U|36
9HFO|1|5|A|37
9HFO|1|5|C|38
9HFO|1|5|C|39

Current chains

Chain 5

fMet-tRNAMet

Nearby chains

Chain 6

mRNA, start codon

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain G

28S ribosomal protein S9, mitochondrial