HL_9HFO_019

3D structure

PDB id

9HFO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translation-initiation state of human mitochondrial ribosome small subunit (State G)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UACCCCA

Length

7 nucleotides

Bulged bases

9HFO|1|A|C|1376, 9HFO|1|A|C|1377, 9HFO|1|A|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HFO_019 not in the Motif Atlas

Geometric match to HL_7VTI_001

Geometric discrepancy: 0.2119

The information below is about HL_7VTI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.6

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

9HFO|1|A|U|1373
9HFO|1|A|A|1374
9HFO|1|A|C|1375
9HFO|1|A|C|1376
9HFO|1|A|C|1377
9HFO|1|A|C|1378
9HFO|1|A|A|1379

Current chains

Chain A

12S mitochondrial rRNA

Nearby chains

Chain F

28S ribosomal protein S7, mitochondrial

Chain G

28S ribosomal protein S9, mitochondrial

Chain X

28S ribosomal protein S29, mitochondrial