HL_9HM4_002

3D structure

PDB id

9HM4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tRNA bound Ba1Cas12a3

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAGCUGGGAG

Length

10 nucleotides

Bulged bases

9HM4|1|D|C|16, 9HM4|1|D|U|17, 9HM4|1|D|G|18, 9HM4|1|D|G|19, 9HM4|1|D|G|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HM4_002 not in the Motif Atlas

Homologous match to HL_7EQJ_004

Geometric discrepancy: 0.1335

The information below is about HL_7EQJ_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

9HM4|1|D|C|13
9HM4|1|D|A|14
9HM4|1|D|G|15
9HM4|1|D|C|16
9HM4|1|D|U|17
9HM4|1|D|G|18
9HM4|1|D|G|19
9HM4|1|D|G|20
9HM4|1|D|A|21
9HM4|1|D|G|22

Current chains

Chain D

Ala tRNA

Nearby chains