HL_9HMW_002
3D structure
- PDB id
- 9HMW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.25 Å
Loop
- Sequence
- GUGAAU(PSU)(OMG)CAGAAUCCCGUGAACC
- Length
- 24 nucleotides
- Bulged bases
- 9HMW|1|3|C|86, 9HMW|1|3|C|88, 9HMW|1|3|U|90, 9HMW|1|3|C|94
- QA status
- Modified nucleotides: PSU, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9HMW|1|3|G|72
9HMW|1|3|U|73
9HMW|1|3|G|74
9HMW|1|3|A|75
9HMW|1|3|A|76
9HMW|1|3|U|77
9HMW|1|3|PSU|78
9HMW|1|3|OMG|79
9HMW|1|3|C|80
9HMW|1|3|A|81
9HMW|1|3|G|82
9HMW|1|3|A|83
9HMW|1|3|A|84
9HMW|1|3|U|85
9HMW|1|3|C|86
9HMW|1|3|C|87
9HMW|1|3|C|88
9HMW|1|3|G|89
9HMW|1|3|U|90
9HMW|1|3|G|91
9HMW|1|3|A|92
9HMW|1|3|A|93
9HMW|1|3|C|94
9HMW|1|3|C|95
Current chains
- Chain 3
- Ribosomal RNA 5.8S
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain AY
- Large ribosomal subunit protein eL37z
- Chain BA
- Large ribosomal subunit protein eL39z/eL39x
- Chain BO
- Large ribosomal subunit protein uL24z
- Chain BP
- Large ribosomal subunit protein uL29x
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