HL_9HMW_035

3D structure

PDB id

9HMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

A(PSU)GAGAA(OMC)U

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HMW|1|A|A|1471
9HMW|1|A|PSU|1472
9HMW|1|A|G|1473
9HMW|1|A|A|1474
9HMW|1|A|G|1475
9HMW|1|A|A|1476
9HMW|1|A|A|1477
9HMW|1|A|OMC|1478
9HMW|1|A|U|1479

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain AK

Large ribosomal subunit protein eL19x

Chain AU

Large ribosomal subunit protein eL31y

Chain BM

Large ribosomal subunit protein uL22z