HL_9HMW_043

3D structure

PDB id

9HMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

CACGUCGCG

Length

9 nucleotides

Bulged bases

9HMW|1|A|U|1764, 9HMW|1|A|C|1765, 9HMW|1|A|G|1766, 9HMW|1|A|C|1767

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HMW|1|A|C|1760
9HMW|1|A|A|1761
9HMW|1|A|C|1762
9HMW|1|A|G|1763
9HMW|1|A|U|1764
9HMW|1|A|C|1765
9HMW|1|A|G|1766
9HMW|1|A|C|1767
9HMW|1|A|G|1768

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain AK

Large ribosomal subunit protein eL19x

Chain AN

Large ribosomal subunit protein eL22z

Chain BN

Large ribosomal subunit protein uL23y