HL_9HMW_106

3D structure

PDB id

9HMW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.25 Å

Loop

Sequence

AUUGCAAUUGU(PSU)

Length

12 nucleotides

Bulged bases

9HMW|1|h1|U|1559, 9HMW|1|h1|U|1560, 9HMW|1|h1|G|1561

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HMW|1|h1|A|1552
9HMW|1|h1|U|1553
9HMW|1|h1|U|1554
9HMW|1|h1|G|1555
9HMW|1|h1|C|1556
9HMW|1|h1|A|1557
9HMW|1|h1|A|1558
9HMW|1|h1|U|1559
9HMW|1|h1|U|1560
9HMW|1|h1|G|1561
9HMW|1|h1|U|1562
9HMW|1|h1|PSU|1563

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain BL

Small ribosomal subunit protein eS19x

Chain Ca

Small ribosomal subunit protein uS14z/uS14y/uS14x

Chain Wa

Small ribosomal subunit protein uS13z/uS13y/uS13x

Chain Ya

Small ribosomal subunit protein uS19y