HL_9HMW_111
3D structure
- PDB id
- 9HMW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs and mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.25 Å
Loop
- Sequence
- GUUCGAUCC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9HMW_111 not in the Motif Atlas
- Homologous match to HL_6UGG_006
- Geometric discrepancy: 0.1124
- The information below is about HL_6UGG_006
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
9HMW|1|i2|G|53
9HMW|1|i2|U|54
9HMW|1|i2|U|55
9HMW|1|i2|C|56
9HMW|1|i2|G|57
9HMW|1|i2|A|58
9HMW|1|i2|U|59
9HMW|1|i2|C|60
9HMW|1|i2|C|61
Current chains
- Chain i2
- Transfer RNA Phe (GAA)
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain BJ
- Large ribosomal subunit protein uL16y
- Chain BU
- Large ribosomal subunit protein uL5z
Coloring options: