HL_9HN9_001

3D structure

PDB id

9HN9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse QTRT1/2 in complex with mouse pre-tRNA-Tyr-1-4

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGUUGGUAG

Length

10 nucleotides

Bulged bases

9HN9|1|C|U|16, 9HN9|1|C|U|17, 9HN9|1|C|G|18, 9HN9|1|C|G|19, 9HN9|1|C|U|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HN9_001 not in the Motif Atlas

Geometric match to HL_6JXM_001

Geometric discrepancy: 0.2331

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

9HN9|1|C|C|13
9HN9|1|C|A|14
9HN9|1|C|G|15
9HN9|1|C|U|16
9HN9|1|C|U|17
9HN9|1|C|G|18
9HN9|1|C|G|19
9HN9|1|C|U|20
9HN9|1|C|A|21
9HN9|1|C|G|22

Current chains

Chain C

mouse pre-tRNA-Tyr-1-4

Nearby chains

Chain B

Queuine tRNA-ribosyltransferase accessory subunit 2