HL_9HQV_001
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- UUACCGUAG
- Length
- 9 nucleotides
- Bulged bases
- 9HQV|1|SA|U|6
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9HQV_001 not in the Motif Atlas
- Geometric match to HL_2NZ4_007
- Geometric discrepancy: 0.2256
- The information below is about HL_2NZ4_007
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.4
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 24
Unit IDs
9HQV|1|SA|U|5
9HQV|1|SA|U|6
9HQV|1|SA|A|7
9HQV|1|SA|C|8
9HQV|1|SA|C|9
9HQV|1|SA|G|10
9HQV|1|SA|U|11
9HQV|1|SA|A|12
9HQV|1|SA|G|13
Current chains
- Chain SA
- SSU-1
Nearby chains
- Chain Bb
- Putative 30S ribosomal protein S5
- Chain Bh
- Putative 30S ribosomal protein S12
- Chain Bp
- mS23
- Chain SF
- SSU-6
- Chain SI
- SSU-9
- Chain SK
- SSU-11
- Chain SR
- SSU-18
- Chain Yr
- Acylphosphatase-like domain-containing protein
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