HL_9HQV_003
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- UGGUUUAAUAAGUCAAAGUUUA
- Length
- 22 nucleotides
- Bulged bases
- 9HQV|1|SD|U|20, 9HQV|1|SD|U|25, 9HQV|1|SD|G|34, 9HQV|1|SD|U|36, 9HQV|1|SD|U|37
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9HQV|1|SD|U|17
9HQV|1|SD|G|18
9HQV|1|SD|G|19
9HQV|1|SD|U|20
9HQV|1|SD|U|21
9HQV|1|SD|U|22
9HQV|1|SD|A|23
9HQV|1|SD|A|24
9HQV|1|SD|U|25
9HQV|1|SD|A|26
9HQV|1|SD|A|27
9HQV|1|SD|G|28
9HQV|1|SD|U|29
9HQV|1|SD|C|30
9HQV|1|SD|A|31
9HQV|1|SD|A|32
9HQV|1|SD|A|33
9HQV|1|SD|G|34
9HQV|1|SD|U|35
9HQV|1|SD|U|36
9HQV|1|SD|U|37
9HQV|1|SD|A|38
Current chains
- Chain SD
- SSU-4
Nearby chains
- Chain Bb
- Putative 30S ribosomal protein S5
- Chain Bd
- Putative ribosomal protein S8
- Chain Bh
- Putative 30S ribosomal protein S12
- Chain Bl
- Putative 30S ribosomal protein S16
- Chain Bm
- Putative ribosomal protein S17
- Chain Bx
- Mitochondrial mRNA-processing protein COX24 C-terminal domain-containing protein
- Chain Bz
- mS45
- Chain SA
- SSU-1
- Chain SB
- SSU-2
- Chain SE
- SSU-5
- Chain SF
- SSU-6
- Chain Ye
- mS121
- Chain Yf
- Macro domain-containing protein
- Chain Yv
- mS138
Coloring options: