HL_9HQV_012
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- UUCUAGAA
- Length
- 8 nucleotides
- Bulged bases
- 9HQV|1|SM|A|53
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9HQV_012 not in the Motif Atlas
- Geometric match to HL_8CRE_219
- Geometric discrepancy: 0.2919
- The information below is about HL_8CRE_219
- Detailed Annotation
- T-loop related
- Broad Annotation
- T-loop
- Motif group
- HL_63894.1
- Basepair signature
- cWW-cWW-F-F-F
- Number of instances in this motif group
- 18
Unit IDs
9HQV|1|SM|U|47
9HQV|1|SM|U|48
9HQV|1|SM|C|49
9HQV|1|SM|U|50
9HQV|1|SM|A|51
9HQV|1|SM|G|52
9HQV|1|SM|A|53
9HQV|1|SM|A|54
Current chains
- Chain SM
- SSU-13
Nearby chains
- Chain Bi
- us13m
- Chain Bs
- DNA double-strand break repair rad50 ATPase
- Chain SP
- SSU-16
- Chain Yp
- mS132
- Chain Ys
- mS135
Coloring options: