HL_9HQV_013
3D structure
- PDB id
- 9HQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of the mitochondrial ribosome from Toxoplasma gondii
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.52 Å
Loop
- Sequence
- GCCAGGUAGUCCUGGAC
- Length
- 17 nucleotides
- Bulged bases
- 9HQV|1|SQ|U|38, 9HQV|1|SQ|C|43
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9HQV|1|SQ|G|32
9HQV|1|SQ|C|33
9HQV|1|SQ|C|34
9HQV|1|SQ|A|35
9HQV|1|SQ|G|36
9HQV|1|SQ|G|37
9HQV|1|SQ|U|38
9HQV|1|SQ|A|39
9HQV|1|SQ|G|40
9HQV|1|SQ|U|41
9HQV|1|SQ|C|42
9HQV|1|SQ|C|43
9HQV|1|SQ|U|44
9HQV|1|SQ|G|45
9HQV|1|SQ|G|46
9HQV|1|SQ|A|47
9HQV|1|SQ|C|48
Current chains
- Chain SQ
- SSU-17
Nearby chains
- Chain BB
- mS75
- Chain BD
- mS92
- Chain Be
- Putative ribosomal protein S9
- Chain Bf
- uS10m
- Chain Bj
- Putative ribosomal protein S14
- Chain SK
- SSU-11
- Chain SM
- SSU-13
- Chain SO
- SSU-15
- Chain SP
- SSU-16
- Chain Yn
- AP2 domain transcription factor AP2IX-6
- Chain Yo
- mS131
- Chain Yp
- mS132
- Chain Yq
- mS133
- Chain Ys
- mS135
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