HL_9HRD_008

3D structure

PDB id

9HRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Class V GTP aptamer in complex with GTP

Experimental method

X-RAY DIFFRACTION

Resolution

2.5 Å

Loop

Sequence

CAUUG

Length

5 nucleotides

Bulged bases

9HRD|1|D|U|50, 9HRD|1|D|U|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HRD_008 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1234

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

9HRD|1|D|C|48
9HRD|1|D|A|49
9HRD|1|D|U|50
9HRD|1|D|U|51
9HRD|1|D|G|52

Current chains

Chain D

Class V GTP aptamer

Nearby chains

Chain C

Class V GTP aptamer