HL_9HUQ_023

3D structure

PDB id

9HUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome with complexed filament nascent chain at length 47, with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UUAACUG

Length

7 nucleotides

Bulged bases

9HUQ|1|b|C|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HUQ_023 not in the Motif Atlas

Geometric match to HL_9DFE_019

Geometric discrepancy: 0.2991

The information below is about HL_9DFE_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9HUQ|1|b|U|641
9HUQ|1|b|U|642
9HUQ|1|b|A|643
9HUQ|1|b|A|644
9HUQ|1|b|C|645
9HUQ|1|b|U|646
9HUQ|1|b|G|647

Current chains

Chain b

23S rRNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL33

Chain 7

Large ribosomal subunit protein bL35