HL_9HUQ_029

3D structure

PDB id

9HUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome with complexed filament nascent chain at length 47, with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

9HUQ|1|b|U|958, 9HUQ|1|b|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HUQ_029 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.1715

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9HUQ|1|b|U|955
9HUQ|1|b|G|956
9HUQ|1|b|C|957
9HUQ|1|b|U|958
9HUQ|1|b|A|959
9HUQ|1|b|A|960
9HUQ|1|b|C|961
9HUQ|1|b|G|962

Current chains

Chain b

23S rRNA

Nearby chains

Chain a

5S ribosomal RNA; 5S rRNA

Chain m

50S ribosomal protein L16