HL_9HY6_001

3D structure

PDB id

9HY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with nascent chain at linker length of 31 amino acids, with mRNA, P-site and A-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

9HY6|1|A|A|14, 9HY6|1|A|U|18, 9HY6|1|A|G|19, 9HY6|1|A|G|20, 9HY6|1|A|U|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HY6_001 not in the Motif Atlas

Homologous match to HL_6JXM_001

Geometric discrepancy: 0.1679

The information below is about HL_6JXM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

9HY6|1|A|C|13
9HY6|1|A|A|14
9HY6|1|A|G|15
9HY6|1|A|C|16
9HY6|1|A|C|17
9HY6|1|A|U|18
9HY6|1|A|G|19
9HY6|1|A|G|20
9HY6|1|A|U|21
9HY6|1|A|A|22
9HY6|1|A|G|23

Current chains

Chain A

pro-tRNA

Nearby chains

Chain b

Large subunit ribosomal RNA; LSU rRNA

Chain f

Large ribosomal subunit protein uL5