HL_9HY6_003
3D structure
- PDB id
- 9HY6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E.coli ribosome with nascent chain at linker length of 31 amino acids, with mRNA, P-site and A-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GUUCGAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9HY6_003 not in the Motif Atlas
- Homologous match to HL_6UGG_006
- Geometric discrepancy: 0.1029
- The information below is about HL_6UGG_006
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
9HY6|1|A|G|54
9HY6|1|A|U|55
9HY6|1|A|U|56
9HY6|1|A|C|57
9HY6|1|A|G|58
9HY6|1|A|A|59
9HY6|1|A|A|60
9HY6|1|A|U|61
9HY6|1|A|C|62
Current chains
- Chain A
- pro-tRNA
Nearby chains
- Chain b
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- Large ribosomal subunit protein uL5
- Chain m
- 50S ribosomal protein L16
Coloring options: