HL_9HY6_018

3D structure

PDB id

9HY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with nascent chain at linker length of 31 amino acids, with mRNA, P-site and A-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

9HY6|1|b|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HY6_018 not in the Motif Atlas

Homologous match to HL_7A0S_013

Geometric discrepancy: 0.3634

The information below is about HL_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.8

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9HY6|1|b|A|382
9HY6|1|b|C|383
9HY6|1|b|A|384
9HY6|1|b|C|385
9HY6|1|b|G|386
9HY6|1|b|U|387
9HY6|1|b|G|388
9HY6|1|b|G|389
9HY6|1|b|U|390
9HY6|1|b|A|391
9HY6|1|b|U|392

Current chains

Chain b

23S rRNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL28