HL_9HY6_030

3D structure

PDB id

9HY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with nascent chain at linker length of 31 amino acids, with mRNA, P-site and A-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

9HY6|1|b|U|827, 9HY6|1|b|G|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HY6_030 not in the Motif Atlas

Homologous match to HL_7A0S_024

Geometric discrepancy: 0.1629

The information below is about HL_7A0S_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.1

Basepair signature

cWW-F-F

Number of instances in this motif group

10

Unit IDs

9HY6|1|b|U|826
9HY6|1|b|U|827
9HY6|1|b|U|828
9HY6|1|b|A|829
9HY6|1|b|G|830
9HY6|1|b|G|831

Current chains

Chain b

23S rRNA

Nearby chains

Chain l

Large ribosomal subunit protein uL15