HL_9HY6_033

3D structure

PDB id

9HY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with nascent chain at linker length of 31 amino acids, with mRNA, P-site and A-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HY6_033 not in the Motif Atlas

Homologous match to HL_7A0S_027

Geometric discrepancy: 0.2369

The information below is about HL_7A0S_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

9HY6|1|b|G|978
9HY6|1|b|A|979
9HY6|1|b|A|980
9HY6|1|b|A|981
9HY6|1|b|C|982
9HY6|1|b|A|983
9HY6|1|b|A|984
9HY6|1|b|C|985

Current chains

Chain b

23S rRNA

Nearby chains

Chain q

Large ribosomal subunit protein bL20

Chain r

Large ribosomal subunit protein bL21