HL_9HY6_048

3D structure

PDB id

9HY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with nascent chain at linker length of 31 amino acids, with mRNA, P-site and A-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

9HY6|1|b|U|1693

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HY6_048 not in the Motif Atlas

Homologous match to HL_7A0S_042

Geometric discrepancy: 0.1855

The information below is about HL_7A0S_042

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.4

Basepair signature

cWW-tSW-F

Number of instances in this motif group

63

Unit IDs

9HY6|1|b|C|1691
9HY6|1|b|U|1692
9HY6|1|b|U|1693
9HY6|1|b|C|1694
9HY6|1|b|G|1695
9HY6|1|b|G|1696

Current chains

Chain b

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2