HL_9HY6_057

3D structure

PDB id

9HY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with nascent chain at linker length of 31 amino acids, with mRNA, P-site and A-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CCUUGAUGUGUAGGAUAGGUGGGAGGCUUAGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACCACCCUUUAAUG

Length

84 nucleotides

Bulged bases

9HY6|1|b|G|2112, 9HY6|1|b|G|2123, 9HY6|1|b|U|2130, 9HY6|1|b|U|2131, 9HY6|1|b|G|2144, 9HY6|1|b|A|2147, 9HY6|1|b|U|2149, 9HY6|1|b|G|2159, 9HY6|1|b|G|2162

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HY6|1|b|C|2103
9HY6|1|b|C|2104
9HY6|1|b|U|2105
9HY6|1|b|U|2106
9HY6|1|b|G|2107
9HY6|1|b|A|2108
9HY6|1|b|U|2109
9HY6|1|b|G|2110
9HY6|1|b|U|2111
9HY6|1|b|G|2112
9HY6|1|b|U|2113
9HY6|1|b|A|2114
9HY6|1|b|G|2115
9HY6|1|b|G|2116
9HY6|1|b|A|2117
9HY6|1|b|U|2118
9HY6|1|b|A|2119
9HY6|1|b|G|2120
9HY6|1|b|G|2121
9HY6|1|b|U|2122
9HY6|1|b|G|2123
9HY6|1|b|G|2124
9HY6|1|b|G|2125
9HY6|1|b|A|2126
9HY6|1|b|G|2127
9HY6|1|b|G|2128
9HY6|1|b|C|2129
9HY6|1|b|U|2130
9HY6|1|b|U|2131
9HY6|1|b|A|2132
9HY6|1|b|G|2133
9HY6|1|b|A|2134
9HY6|1|b|A|2135
9HY6|1|b|G|2136
9HY6|1|b|U|2137
9HY6|1|b|G|2138
9HY6|1|b|U|2139
9HY6|1|b|G|2140
9HY6|1|b|G|2141
9HY6|1|b|A|2142
9HY6|1|b|C|2143
9HY6|1|b|G|2144
9HY6|1|b|C|2145
9HY6|1|b|C|2146
9HY6|1|b|A|2147
9HY6|1|b|G|2148
9HY6|1|b|U|2149
9HY6|1|b|C|2150
9HY6|1|b|U|2151
9HY6|1|b|G|2152
9HY6|1|b|C|2153
9HY6|1|b|A|2154
9HY6|1|b|U|2155
9HY6|1|b|G|2156
9HY6|1|b|G|2157
9HY6|1|b|A|2158
9HY6|1|b|G|2159
9HY6|1|b|C|2160
9HY6|1|b|C|2161
9HY6|1|b|G|2162
9HY6|1|b|A|2163
9HY6|1|b|C|2164
9HY6|1|b|C|2165
9HY6|1|b|U|2166
9HY6|1|b|U|2167
9HY6|1|b|G|2168
9HY6|1|b|A|2169
9HY6|1|b|A|2170
9HY6|1|b|A|2171
9HY6|1|b|U|2172
9HY6|1|b|A|2173
9HY6|1|b|C|2174
9HY6|1|b|C|2175
9HY6|1|b|A|2176
9HY6|1|b|C|2177
9HY6|1|b|C|2178
9HY6|1|b|C|2179
9HY6|1|b|U|2180
9HY6|1|b|U|2181
9HY6|1|b|U|2182
9HY6|1|b|A|2183
9HY6|1|b|A|2184
9HY6|1|b|U|2185
9HY6|1|b|G|2186

Current chains

Chain b

23S rRNA

Nearby chains