HL_9HY6_064

3D structure

PDB id

9HY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with nascent chain at linker length of 31 amino acids, with mRNA, P-site and A-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HY6_064 not in the Motif Atlas

Homologous match to HL_7A0S_057

Geometric discrepancy: 0.2432

The information below is about HL_7A0S_057

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

9HY6|1|b|C|2374
9HY6|1|b|G|2375
9HY6|1|b|A|2376
9HY6|1|b|A|2377
9HY6|1|b|A|2378
9HY6|1|b|G|2379

Current chains

Chain b

23S rRNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL33

Chain o

Large ribosomal subunit protein uL18