HL_9HY6_068

3D structure

PDB id

9HY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with nascent chain at linker length of 31 amino acids, with mRNA, P-site and A-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUGUUCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HY6_068 not in the Motif Atlas

Homologous match to HL_7A0S_061

Geometric discrepancy: 0.1969

The information below is about HL_7A0S_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

9HY6|1|b|C|2551
9HY6|1|b|U|2552
9HY6|1|b|G|2553
9HY6|1|b|U|2554
9HY6|1|b|U|2555
9HY6|1|b|C|2556
9HY6|1|b|G|2557

Current chains

Chain b

23S rRNA

Nearby chains

Chain v

Transfer RNA; tRNA