HL_9HYM_003
3D structure
- PDB id
- 9HYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUUCGAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9HYM_003 not in the Motif Atlas
- Homologous match to HL_6UGG_006
- Geometric discrepancy: 0.0742
- The information below is about HL_6UGG_006
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
9HYM|1|A|G|54
9HYM|1|A|U|55
9HYM|1|A|U|56
9HYM|1|A|C|57
9HYM|1|A|G|58
9HYM|1|A|A|59
9HYM|1|A|A|60
9HYM|1|A|U|61
9HYM|1|A|C|62
Current chains
- Chain A
- Acetyl Pro-tRNA
Nearby chains
- Chain b
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- Large ribosomal subunit protein uL5
- Chain m
- 50S ribosomal protein L16
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