HL_9HYM_010

3D structure

PDB id

9HYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UUUCGA

Length

6 nucleotides

Bulged bases

9HYM|1|b|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9HYM_010 not in the Motif Atlas

Geometric match to HL_5LYS_002

Geometric discrepancy: 0.1345

The information below is about HL_5LYS_002

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_61337.3

Basepair signature

cWW-tSW-F

Number of instances in this motif group

62

Unit IDs

9HYM|1|b|U|137
9HYM|1|b|U|138
9HYM|1|b|U|139
9HYM|1|b|C|140
9HYM|1|b|G|141
9HYM|1|b|A|142

Current chains

Chain b

23S rRNA

Nearby chains

Chain t

Large ribosomal subunit protein uL23